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Author SHA1 Message Date
Ashley Bao
5af2daa5ad scripts to fix codox generation 2023-01-24 16:25:14 -05:00
Ashley Bao
3308ba65dd added docs for additional instructions 2023-01-24 14:38:24 -05:00
Ashley Bao
064ba4afbd a guide to propeller update 2023-01-20 15:34:18 -05:00
Ashley Bao
a07f5ba17b udpate docs 2023-01-20 15:21:08 -05:00
Ashley Bao
82a2eec301 ordering in html 2023-01-20 15:01:15 -05:00
Ashley Bao
af0e04a639 udpated docs 2023-01-20 14:58:56 -05:00
Ashley Bao
a2570b4cde updated software and push instructions 2023-01-19 15:50:28 -05:00
Ashley Bao
62f64dee66 Update Adding_Selection_Method.html 2023-01-18 17:17:05 -05:00
Ashley Bao
e1379eb6e3 Update selection method 2023-01-18 17:14:05 -05:00
Ashley Bao
fb0888edd5 update docs site 2023-01-18 17:01:12 -05:00
Ashley Bao
a00c35385f updated docs 2023-01-17 20:47:53 -05:00
Ashley Bao
b2d534b189 moved files 2023-01-16 12:38:28 -05:00
Ashley Bao
c9d424cfdf renamed to docs 2023-01-16 12:36:53 -05:00
Ashley Bao
ff61655e7e adding codox 2023-01-16 12:30:01 -05:00
Ashley Bao
e7240e01d8 created deps.edn file 2023-01-16 12:29:00 -05:00
Ashley Bao
b6b7a5bf9b added docstrings to problems 2023-01-13 17:39:28 -05:00
Ashley Bao
4f2db7a406 removed cache files 2023-01-12 20:45:29 -05:00
Ashley Bao
ace5afc907 update gitignore 2023-01-12 20:39:18 -05:00
Ashley Bao
204c8ae0a5 created deps.edn file 2023-01-12 19:20:12 -05:00
Ashley Bao
84f2e6a88d added docstrings 
more comments in genome, gp, selection, simplification, utils, variation
 2023-01-11 21:37:37 -05:00
Ashley Bao
962dd5a55b added explanation of session namespace 2023-01-09 16:42:28 -05:00
Lee Spector
f83ad0f8ef Return 0.0 from mean of empty collection 2023-01-07 12:10:35 -05:00
Lee Spector
685bc86fc0 Fix formatting 2023-01-07 11:57:53 -05:00
Lee Spector
19d049500b Fix formatting 2023-01-07 11:55:19 -05:00
Lee Spector
9a10faaec2
Merge pull request #53 from dndang23/epsilon-lexicase-selection 
Implemented epsilon-lexicase selection in selection.cljc and calculated epsilons once per generation in gp.cljc
 2023-01-07 11:46:20 -05:00
dndang23
bff4da6975 Made organizational changes suggested by Ryan 2023-01-05 16:21:21 -08:00
dndang23
072b8af061 Added comments 2022-12-29 18:22:02 -05:00
dndang23
c5dd970149 Implemented epsilon-lexicase selection into propeller 2022-12-28 17:14:54 -05:00
Lee Spector
262ddb83a1
Merge pull request #49 from lspector/dependabot/npm_and_yarn/async-2.6.4 
Bump async from 2.6.3 to 2.6.4
 2022-04-30 22:49:46 -04:00
dependabot[bot]
e4a1ef09fc
Bump async from 2.6.3 to 2.6.4 
Bumps [async](https://github.com/caolan/async) from 2.6.3 to 2.6.4.
- [Release notes](https://github.com/caolan/async/releases)
- [Changelog](https://github.com/caolan/async/blob/v2.6.4/CHANGELOG.md)
- [Commits](https://github.com/caolan/async/compare/v2.6.3...v2.6.4)

---
updated-dependencies:
- dependency-name: async
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-04-29 16:35:37 +00:00
Lee Spector
acfb03f39b Bump version 2022-03-28 12:32:15 -04:00
Lee Spector
a1252c5c0a Update session.cljc to specify training/testing data among other things 2022-03-28 12:29:04 -04:00
Lee Spector
0412f4015b
Merge pull request #46 from NicMcPhee/fix-from-string-instruction 
Fix from string instruction and several PSB2 problems
 2022-03-04 19:34:18 -05:00
Lee Spector
10f1b90ea0
Merge pull request #45 from ryanboldi/simplification 
Simplification Update - Docs & more readable code
 2022-03-04 19:32:14 -05:00
Ryan Boldi
64a81cb450 update documentation to include simplification 2022-03-03 22:56:37 -05:00
Ryan Boldi
a7b625d942 removed simplification complexity from gp.cljc and added it to simplification.cljc. 
also updated tests to reflect this
 2022-03-03 22:56:10 -05:00
RichardLussier
c6f08d4ca3 Fix other read-string uses in PSB2 problems 
Since removing 'read-string' and 'str' from middle-character and twitter seemed to help diversify the outputs, we chose to replace all other occurrences of this pattern from the other PSB2 problems. Additionally, this conversion with 'read-string' and 'str' was completely unnecessary since the program was already taking from the top of the string stack.
 2022-03-03 14:44:09 -06:00
Lee Spector
e47db0f5f6
Merge pull request #44 from ryanboldi/fixed-data-representations 
Made all training data representations consistent with PSB2
 2022-03-02 10:07:43 -05:00
Ryan Boldi
74d4f95b04 made all training data representations consistent with PSB2 2022-03-01 23:25:15 -05:00
Lee Spector
4849757c56
Merge pull request #43 from ryanboldi/simplification 
fixed wrong number of args to simplification code
 2022-03-01 18:26:01 -05:00
Ryan Boldi
793ff2880d fixed wrong number of args to simplification code 2022-03-01 17:14:40 -05:00
Lee Spector
6ee30d86ba
Merge pull request #42 from ryanboldi/simplification 
Autosimplification and Tests
 2022-02-26 21:32:08 -05:00
Ryan Boldi
be3402dae2 Revert "autosimplification implementation complete" 
This reverts commit af22f9793b70339b9c90cfa2b99c327426840471.
 2022-02-26 21:14:16 -05:00
Ryan Boldi
f1838b6b32 autosimplification implementation complete 2022-02-26 21:11:38 -05:00
Ryan Boldi
af22f9793b autosimplification implementation complete 2022-02-26 21:08:04 -05:00
Ryan Boldi
f369d23ad5 simplified simplification.cljc 2022-02-26 21:07:33 -05:00
Ryan Boldi
e25dab4798 Implements auto-simplification using k-annealing & tests 
Select k random elements in plushy. Delete these, and see if the plushy's behaviors are still identical. If they are, this is now the current plushy. If not, decrease k with a certain prob, and try again.
 2022-02-26 21:07:32 -05:00
Ryan Boldi
a215c1c271 added more communicative autosimplification tests 2022-02-26 21:04:29 -05:00
Nic McPhee
404e640cfb Further improve Middle Character and Twitter 
Upon further inspection, Richard and I realized that we didn't need to have `parsed-outputs` at all in problems that just return a string (take the top value from the `:string` stack).

So we removed all that from the Middle Character and Twitter problems, and removed the unnecessary calls to `str` in the `levenshtein-distance` calls.

Co-authored-by: RichardLussier <lussi036@morris.umn.edu>
 2022-02-25 16:49:45 -06:00
Nic McPhee
cb33af755a Remove unnecessary use of read-string in Middle Character 
For some reason `read-string` was being called to parse a string to a string in Middle Character, along with a totally unnecessary try/catch block.

This cleans that up.

It looks like most if not all of the PSB2 problems have this issue and we'll need to go through and update all of those to not use `read-string`.
 2022-02-25 16:29:32 -06:00