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Author SHA1 Message Date
Nic McPhee
a6e195eb0e Add data and .calva to .gitignore 
We don't want to be committing the data files or the Calva files generated by running Clojure in VS Code. This fixes that.
 2020-12-17 08:15:40 -06:00
Lee Spector
8cd1a79da3 Pass argmap to report 2020-12-09 10:50:49 -05:00
Lee Spector
2f4adfde7a Pass argmap to report 2020-12-09 10:49:53 -05:00
Lee Spector
b68cf4ad75 Pass argmap to plushy->post in report 2020-12-09 10:46:02 -05:00
Lee Spector
40ac1c73a4 Add uniform-replacement 2020-12-09 10:44:57 -05:00
Lee Spector
0af6aa095e Add uniform-replacement; pass argmap to plushy->push in report 2020-12-09 10:42:05 -05:00
Lee Spector
0a5a655181 Make genetic operator dispatch more modular and extensible 2020-12-08 22:59:44 -05:00
Lee Spector
180a7fdbe0 Provide more modular and and extensible approach to genetic operator dispatch 2020-12-08 22:53:37 -05:00
Lee Spector
09d5455da3 Remove extraneous argmap argument 2020-12-08 12:21:40 -05:00
Lee Spector
aed8eb8a76 Fix handling of boolean input values 2020-12-08 12:20:26 -05:00
Lee Spector
d49f9e4bf0 Remove extraneous argmap argument; experiment with valiant 2020-12-08 12:12:23 -05:00
Lee Spector
bb916c2ad3 Fix handling of false boolean input values; continue development of valiant problem 2020-12-07 20:19:59 -05:00
Lee Spector
14f63f880b Fix comment and error message in handle-input-instruction; begin developing valiant problem 2020-12-07 13:58:34 -05:00
Lee Spector
7a16770cb9
Merge pull request #9 from NicMcPhee/command-line-problem-specification 
Support command-line problem specification
 2020-12-04 18:49:20 -05:00
Lee Spector
7ecc32f13e Merge branch 'master' of https://github.com/lspector/propeller 2020-12-04 18:40:34 -05:00
Lee Spector
14e6cfcd08 Reformat 2020-11-29 22:29:31 -05:00
Lee Spector
d309869919 Comment out shutdown-agents since agents not currently used and this messes up REPL sessions 2020-11-29 22:16:29 -05:00
Lee Spector
4783d6695a Fix string-classification problem by adding train-and-test-data and fixing wrong instruction name 2020-11-29 22:09:36 -05:00
Lee Spector
0c6ebde41b Fix :flip that should be :diploid-flip 2020-11-29 21:43:00 -05:00
Lee Spector
81f2c3197f Distinguish flip rate from flip probability 2020-11-29 21:32:42 -05:00
Nic McPhee
e05290d87c Support command-line problem specification 
This change uses the first command-line argument as the problem, which is assumed to be a namespace under `propeller.problems`. This will load the `instructions` and `error-function` from that namespace. If no problem is specified, then a (hopefully) helpful error is generated and the programs exits.

This allows us to call Propeller with calls such as:

```
   lein run software.smallest
```
 2020-11-24 16:42:22 -06:00
Lee Spector
f2e4cf0e1e
Merge pull request #8 from NicMcPhee/limit-dup-times 
Limit stack size when using `_dup_times` and `_dup_items`
 2020-11-24 17:24:32 -05:00
Nic McPhee
da84852245 Move max-stack-items to globals 
This creates a `push/utils/globals/cljc` similar to that created by @mcgirjau and moved the `max-stack-items` def to that namespace, updating `polymorphic` as necessary.
 2020-11-24 16:00:03 -06:00
Nic McPhee
f675f69276 Merge branch 'master' into limit-dup-times 2020-11-24 15:53:36 -06:00
Nic McPhee
0ca5e77d7a Merge remote-tracking branch 'upstream/master' 2020-11-24 15:19:29 -06:00
Lee Spector
35ac379f06 Add more examples to session.clj 2020-11-24 16:09:44 -05:00
Lee Spector
628329e6bf Resolve merge conflict 2020-11-23 21:28:51 -05:00
Lee Spector
a8e9de97ce Fix peek-stack for false on boolean stack 2020-11-23 09:57:04 -05:00
Lee Spector
3ba030ceec Add train/test data support to simple-regression problem 2020-11-23 09:51:19 -05:00
Lee Spector
509c22b79c Fix naming clash in new-individual 2020-11-23 07:49:40 -05:00
Lee Spector
f8bdacc388 Remove debugging printing; update session.clj 2020-11-22 23:35:07 -05:00
Lee Spector
28da548e4c Undo wrong fix for exec_if; fix peek-stack for false on boolean stack 2020-11-22 23:28:02 -05:00
Lee Spector
0482ccccf5 Correct order of clauses for exec_if 2020-11-22 22:05:42 -05:00
Lee Spector
97de757f57 Begin bringing session.clj up to date 2020-11-22 21:57:29 -05:00
Lee Spector
b6a9a410c1 Call diploid-flip when appropriate; make new-individual robust to missing rates 2020-11-22 21:40:57 -05:00
Lee Spector
224d33c19d Add diploid-flip genetic operator 2020-11-22 21:32:49 -05:00
Lee Spector
4df6ea7fdd Use diploid operators when called for; fix bug in diploid-uniform-addition 2020-11-22 21:27:07 -05:00
Lee Spector
67fcdb13b5 Undo deletion rate adjustment (done elsewhere), remove argmap arguments to genetic operators, define diploid genetic operators 2020-11-22 21:18:30 -05:00
Lee Spector
55644a9b6d Make crossover, uniform-addition, and uniform-deletion take argmap arguments 2020-11-22 21:06:39 -05:00
Lee Spector
aadc28d371 Make plushy->push use an empty argmap if none was passed. 2020-11-22 16:35:46 -05:00
Lee Spector
0a5e17195e Scale UMAD deletion rate from addion rate for size neutrality 2020-11-22 16:30:25 -05:00
Lee Spector
bd5f4aba40 Remove extraneous 2 2020-11-22 16:25:37 -05:00
Lee Spector
12002d17a6 Make plushy->push obey :diploid setting 2020-11-22 16:19:24 -05:00
Lee Spector
4516339412 Pass argmap to plushy->push 2020-11-22 16:14:01 -05:00
Lee Spector
f47e5e924a
Merge pull request #7 from NicMcPhee/fix-random-int-generation 
Fix bug in `random-int`
 2020-11-10 21:06:22 -05:00
Nic McPhee
bfa557c6a1 Fix bug in random-int 
The `random-int` function in both `number-io` and `smallest` subtracted a floating point value (`100.0`), which means they were both _actually_ returning a float instead of an int.

This removes both of the ".0"s so that they return integers as advertised.
 2020-11-10 16:59:32 -06:00
Nic McPhee
1a882836de Limit number of duplications onto a stack 
Both `_dup_times` and `_dup_items` are risky and can place very large numbers of items on a stack if the value on the `:integer` is large. This limits both `_dup_times` and `_dup_items` so they never make a stack have more than `max-stack-items` entries.

This change was motivated by `OutOfMemory` errors we were receiving when doing runs. This is somewhat modeled after similar limits in Clojush, but we chose to not introduce an `atom` and to instead just define a constant in this namespace. That may not be as flexible as people would like, and we can move to the `atom` solution if necessary.
 2020-11-10 16:17:50 -06:00
Nic McPhee
89f0f3568a Add stack-size 
Adds a function that returns the size of the specified stack in a given state.
 2020-11-10 16:14:23 -06:00
Lee Spector
db085080b3
Merge pull request #6 from skwak22/master 
This version of propeller has full CLJS functionality and compiles with shadow-cljs
 2020-07-23 15:21:37 -04:00
Sunghoon Kwak
bdff94091b
Update license info 2020-07-15 22:44:25 +09:00